Package: nimbleSCR 0.2.1

nimbleSCR: Spatial Capture-Recapture (SCR) Methods Using 'nimble'

Provides utility functions, distributions, and fitting methods for Bayesian Spatial Capture-Recapture (SCR) and Open Population Spatial Capture-Recapture (OPSCR) modelling using the nimble package (de Valpine et al. 2017 <doi:10.1080/10618600.2016.1172487 >). Development of the package was motivated primarily by the need for flexible and efficient analysis of large-scale SCR data (Bischof et al. 2020 <doi:10.1073/pnas.2011383117 >). Computational methods and techniques implemented in nimbleSCR include those discussed in Turek et al. 2021 <doi:10.1002/ecs2.3385>; among others. For a recent application of nimbleSCR, see Milleret et al. (2021) <doi:10.1098/rsbl.2021.0128>.

Authors:Richard Bischof [aut], Daniel Turek [aut, cre], Cyril Milleret [aut], Torbjørn Ergon [aut], Pierre Dupont [aut], Soumen Dey [aut], Wei Zhang [aut], Perry de Valpine [aut]

nimbleSCR_0.2.1.tar.gz
nimbleSCR_0.2.1.zip(r-4.5)nimbleSCR_0.2.1.zip(r-4.4)nimbleSCR_0.2.1.zip(r-4.3)
nimbleSCR_0.2.1.tgz(r-4.4-any)nimbleSCR_0.2.1.tgz(r-4.3-any)
nimbleSCR_0.2.1.tar.gz(r-4.5-noble)nimbleSCR_0.2.1.tar.gz(r-4.4-noble)
nimbleSCR_0.2.1.tgz(r-4.4-emscripten)nimbleSCR_0.2.1.tgz(r-4.3-emscripten)
nimbleSCR.pdf |nimbleSCR.html✨
nimbleSCR/json (API)
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69 exports 0.36 score 16 dependencies 1 mentions 192 scripts 273 downloads

Last updated 2 years agofrom:8449287983. Checks:OK: 1 NOTE: 6. Indexed: yes.

Exports:calcLocalTrapDistscalcLocalTrapExposurecalculateDensitycalcWindowSizesdbernppACdbernppACmovement_expdbernppACmovement_normaldbernppDetection_normaldbernppLocalACmovement_expdbernppLocalACmovement_normaldbernppLocalDetection_normaldbinom_vectordbinomLocal_expdbinomLocal_normaldbinomLocal_normalPlateaudcatState1Alive1DeaddcatState1Alive2DeaddcatState2Alive2DeaddDispersal_expdHabitatMaskdmultiLocal_normaldnormalizerdpoisLocal_normaldpoisppACdpoisppDetection_normaldpoisppLocalDetection_normalfindLocalTrapsgetHomeRangeAreagetLocalObjectsgetLocalTrapIndicesgetMidPointNodesgetNumLocalTrapsgetSparseYgetWindowCoordsgetWindowIndexintegrateIntensity_expintegrateIntensity_normalintegrateIntensityLocal_expintegrateIntensityLocal_normalmakeConstantNimbleFunctionmakeGridmarginalVoidProbIntegrandmarginalVoidProbNumIntegrationrbernppACrbernppACmovement_exprbernppACmovement_normalrbernppDetection_normalrbernppLocalACmovement_exprbernppLocalACmovement_normalrbernppLocalDetection_normalrbinom_vectorrbinomLocal_exprbinomLocal_normalrbinomLocal_normalPlateaurcatState1Alive1DeadrcatState1Alive2DeadrcatState2Alive2DeadrDispersal_exprHabitatMaskrmultiLocal_normalrnormalizerrpoisLocal_normalrpoisppACrpoisppDetection_normalrpoisppLocalDetection_normalsampler_categorical_generalscaleCoordsToHabitatGridstratRejectionSampler_expstratRejectionSampler_normal

Dependencies:clicodacpp11glueigraphlatticelifecyclemagrittrMatrixnimblenumDerivpkgconfigpracmaR6rlangvctrs